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1.
Viruses ; 16(4)2024 Apr 22.
Article in English | MEDLINE | ID: mdl-38675993

ABSTRACT

Bellinger River virus (BRV) is a serpentovirus (nidovirus) that was likely responsible for the catastrophic mortality of the Australian freshwater turtle Myuchelys georgesi in February 2015. From November 2015 to November 2020, swabs were collected from turtles during repeated river surveys to estimate the prevalence of BRV RNA, identify risk factors associated with BRV infection, and refine sample collection. BRV RNA prevalence at first capture was significantly higher in M. georgesi (10.8%) than in a coexisting turtle, Emydura macquarii (1.0%). For M. georgesi, various risk factors were identified depending on the analysis method, but a positive BRV result was consistently associated with a larger body size. All turtles were asymptomatic when sampled and conjunctival swabs were inferred to be optimal for ongoing monitoring. Although the absence of disease and recent BRV detections suggests a reduced ongoing threat, the potential for the virus to persist in an endemic focus or resurge in cyclical epidemics cannot be excluded. Therefore, BRV is an ongoing potential threat to the conservation of M. georgesi, and strict adherence to biosecurity principles is essential to minimise the risk of reintroduction or spread of BRV or other pathogens.


Subject(s)
Endangered Species , Turtles , Animals , Turtles/virology , Australia/epidemiology , Nidovirales/genetics , Nidovirales/isolation & purification , Nidovirales Infections/epidemiology , Nidovirales Infections/veterinary , Nidovirales Infections/virology , Prevalence , Phylogeny , Rivers/virology , RNA, Viral/genetics , Risk Factors
2.
Infect Genet Evol ; 120: 105585, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38508364

ABSTRACT

In this study, a picornavirus and a nidovirus were identified from a single available nasopharyngeal swab (NPS) sample of a freshly deceased sheep, as the only vertebrate viruses found with viral metagenomics and next-generation sequencing methods. The sample was originated from a mixed feedlot farm in Hungary where sheep and cattle were held together but in separate stalls. Most of the sheep had respiratory signs (coughing and increased respiratory effort) at the time of sampling. Other NPS were not, but additional enteric samples were collected from sheep (n = 27) and cattle (n = 11) of the same farm at that time. The complete/nearly complete genomes of the identified viruses were determined using RT-PCR and Nanopore (MinION-Flonge) / Dye-terminator sequencing techniques. The results of detailed genomic and phylogenetic analyses indicate that the identified picornavirus most likely belongs to a type 4 genotype of species Bovine rhinitis B virus (BRBV-4, OR885914) of genus Aphthovirus, family Picornaviridae while the ovine nidovirus (OvNV, OR885915) - as a novel variant - could belong to the recently created Bovine nidovirus 1 (BoNV) species of genus Bostovirus, family Tobaniviridae. None of the identified viruses were detectable in the enteric samples using RT-PCR and generic screening primer pairs. Both viruses are well-known respiratory pathogens of cattle, but their presence was not demonstrated before in other animals, like sheep. Furthermore, neither BRBV-4 nor BoNVs were investigated in European cattle and/or sheep flocks, therefore it cannot be determined whether the presence of these viruses in sheep was a result of a single host species switch/spillover event or these viruses are circulating in not just cattle but sheep populations as well. Further studies required to investigate the spread of these viruses in Hungarian and European sheep and cattle populations and to identify their pathogenic potential in sheep.


Subject(s)
Phylogeny , Picornaviridae Infections , Picornaviridae , Sheep Diseases , Animals , Hungary , Picornaviridae/genetics , Picornaviridae/isolation & purification , Picornaviridae/classification , Sheep , Sheep Diseases/virology , Cattle , Picornaviridae Infections/veterinary , Picornaviridae Infections/virology , Coinfection/virology , Coinfection/veterinary , Genome, Viral , Nidovirales/genetics , Nidovirales/isolation & purification , Nidovirales/classification , Nidovirales Infections/veterinary , Nidovirales Infections/virology
3.
J Virol ; 94(18)2020 08 31.
Article in English | MEDLINE | ID: mdl-32641481

ABSTRACT

In recent years, nidoviruses have emerged as important respiratory pathogens of reptiles, affecting captive python populations. In pythons, nidovirus (recently reclassified as serpentovirus) infection induces an inflammation of the upper respiratory and alimentary tract which can develop into a severe, often fatal proliferative pneumonia. We observed pyogranulomatous and fibrinonecrotic lesions in organ systems other than the respiratory tract during full postmortem examinations on 30 serpentovirus reverse transcription-PCR (RT-PCR)-positive pythons of varying species originating from Switzerland and Spain. The observations prompted us to study whether this not yet reported wider distribution of lesions is associated with previously unknown serpentoviruses or changes in the serpentovirus genome. RT-PCR and inoculation of Morelia viridis cell cultures served to recruit the cases and obtain virus isolates. Immunohistochemistry and immunofluorescence staining against serpentovirus nucleoprotein demonstrated that the virus infects not only a broad spectrum of epithelia (respiratory and alimentary epithelium, hepatocytes, renal tubules, pancreatic ducts, etc.), but also intravascular monocytes, intralesional macrophages, and endothelial cells. With next-generation sequencing we obtained a full-length genome for a novel serpentovirus species circulating in Switzerland. Analysis of viral genomes recovered from pythons showing serpentovirus infection-associated respiratory or systemic disease did not reveal sequence association to phenotypes; however, functional studies with different strains are needed to confirm this observation. The results indicate that serpentoviruses have a broad cell and tissue tropism, further suggesting that the course of infection could vary and involve lesions in a broad spectrum of tissues and organ systems as a consequence of monocyte-mediated viral systemic spread.IMPORTANCE During the last years, python nidoviruses (now reclassified as serpentoviruses) have become a primary cause of fatal disease in pythons. Serpentoviruses represent a threat to captive snake collections, as they spread rapidly and can be associated with high morbidity and mortality. Our study indicates that, different from previous evidence, the viruses do not only affect the respiratory tract, but can spread in the entire body with blood monocytes, have a broad spectrum of target cells, and can induce a variety of lesions. Nidovirales is an order of animal and human viruses that comprises important zoonotic pathogens such as Middle East respiratory syndrome coronavirus (MERS-CoV), severe acute respiratory syndrome coronavirus (SARS-CoV), and SARS-CoV-2. Serpentoviruses belong to the same order as the above-mentioned human viruses and show similar characteristics (rapid spread, respiratory and gastrointestinal tropism, etc.). The present study confirms the relevance of natural animal diseases to better understand the complexity of viruses of the order Nidovirales.


Subject(s)
Nidovirales Infections/virology , Nidovirales/physiology , Respiratory Tract Infections/virology , Animal Diseases/diagnosis , Animal Diseases/virology , Animals , Biopsy , Boidae/virology , Disease Susceptibility , Humans , Immunohistochemistry , Nidovirales/isolation & purification , Nidovirales Infections/diagnosis , Organ Specificity , Phenotype , Phylogeny , Recombination, Genetic , Respiratory Tract Infections/diagnosis , Viral Tropism , Virus Shedding
4.
J Vet Med Sci ; 82(6): 788-792, 2020 Jun 24.
Article in English | MEDLINE | ID: mdl-32378646

ABSTRACT

Reptile-associated nidoviruses (serpentoviruses) have been reported to cause proliferative interstitial pneumonia in pythons and other reptile species. A captive, younger than 2 years old, intact female ball python (Python regius) showed increased oral mucus, wheezing, and audible breathing with weight loss. Gross and microscopic examination revealed large amounts of mucus in the esophagus and proliferative interstitial pneumonia. Serpentovirus genes were detected from the lung tissues by polymerase chain reaction. The current serpentoviruses was phylogenetically grouped with the serpentovirus previously identified in the US. No case of serpentovirus infection has been reported in Asia. The present report provides information of complete genome sequence and global distribution of serpentovirus.


Subject(s)
Boidae/virology , Nidovirales Infections/veterinary , Nidovirales/isolation & purification , Animals , Female , Genome, Viral , Lung Diseases, Interstitial/veterinary , Lung Diseases, Interstitial/virology , Nidovirales/genetics , Phylogeny , Polymerase Chain Reaction , Taiwan
5.
Virol J ; 17(1): 6, 2020 01 17.
Article in English | MEDLINE | ID: mdl-31952524

ABSTRACT

BACKGROUND: Pneumonia and stomatitis represent severe and often fatal diseases in different captive snakes. Apart from bacterial infections, paramyxo-, adeno-, reo- and arenaviruses cause these diseases. In 2014, new viruses emerged as the cause of pneumonia in pythons. In a few publications, nidoviruses have been reported in association with pneumonia in ball pythons and a tiger python. The viruses were found using new sequencing methods from the organ tissue of dead animals. METHODS: Severe pneumonia and stomatitis resulted in a high mortality rate in a captive breeding collection of green tree pythons. Unbiased deep sequencing lead to the detection of nidoviral sequences. A developed RT-qPCR was used to confirm the metagenome results and to determine the importance of this virus. A total of 1554 different boid snakes, including animals suffering from respiratory diseases as well as healthy controls, were screened for nidoviruses. Furthermore, in addition to two full-length sequences, partial sequences were generated from different snake species. RESULTS: The assembled full-length snake nidovirus genomes share only an overall genome sequence identity of less than 66.9% to other published snake nidoviruses and new partial sequences vary between 99.89 and 79.4%. Highest viral loads were detected in lung samples. The snake nidovirus was not only present in diseased animals, but also in snakes showing no typical clinical signs. CONCLUSIONS: Our findings further highlight the possible importance of snake nidoviruses in respiratory diseases and proof multiple circulating strains with varying disease potential. Nidovirus detection in clinical healthy individuals might represent testing during the incubation period or reconvalescence. Our investigations show new aspects of nidovirus infections in pythons. Nidoviruses should be included in routine diagnostic workup of diseased reptiles.


Subject(s)
Boidae/virology , Nidovirales Infections/veterinary , Nidovirales , Animals , Communicable Diseases, Emerging/veterinary , Communicable Diseases, Emerging/virology , Metagenomics , Nidovirales/genetics , Nidovirales/isolation & purification , Phylogeny , Pneumonia/veterinary , Pneumonia/virology , RNA, Viral/genetics , Stomatitis/veterinary , Stomatitis/virology
6.
Virus Res ; 275: 197802, 2020 01 02.
Article in English | MEDLINE | ID: mdl-31697989

ABSTRACT

An increasing number of insect-specific viruses are found around the world. Very recently, a new group of insect-specific viruses, the Mesoniviridae family, was discovered in Africa, Asia, North America and Australia. Here we report the first detection and isolation of a new virus belonging to Mesonivirus genus in Senegal, West Africa. The so-called Dianke virus was detected in 21 species of arthropods trapped in the eastern part of the country. Male individuals were also infected, supporting vertical transmission assertion of insect specific viruses. As described for other mesoniviruses, no viral replication was observed after inoculation of mammalian cells. Viral replication in mosquito cells was blocked at a temperature of 37 °C, highlighting the importance of thermal conditions in Mesonivirus host restriction. Similar to our study, where a diverse range of arthropod vectors were found infected by the new virus, several studies have detected mesonivirus infection in mosquitoes with concerns for human health. It has been shown that dual infections in mosquito can alter viral infectivity. Due to their extensive geographic distribution and host range, as well as their use as potential disease control agents in vector populations, more studies should be done for a better knowledge of arthropod-restricted viruses prevalence and diversity.


Subject(s)
Aedes/virology , Nidovirales/classification , Phylogeny , Animals , Arthropod Vectors/virology , Insect Viruses/classification , Insect Viruses/isolation & purification , Male , Mosquito Vectors/virology , Nidovirales/isolation & purification , RNA, Viral/genetics , Senegal , Temperature , Virus Replication
7.
Elife ; 82019 09 03.
Article in English | MEDLINE | ID: mdl-31478480

ABSTRACT

The collapse of iconic, keystone populations of sockeye (Oncorhynchus nerka) and Chinook (Oncorhynchus tshawytscha) salmon in the Northeast Pacific is of great concern. It is thought that infectious disease may contribute to declines, but little is known about viruses endemic to Pacific salmon. Metatranscriptomic sequencing and surveillance of dead and moribund cultured Chinook salmon revealed a novel arenavirus, reovirus and nidovirus. Sequencing revealed two different arenavirus variants which each infect wild Chinook and sockeye salmon. In situ hybridisation localised arenavirus mostly to blood cells. Population surveys of >6000 wild juvenile Chinook and sockeye salmon showed divergent distributions of viruses, implying different epidemiological processes. The discovery in dead and dying farmed salmon of previously unrecognised viruses that are also widely distributed in wild salmon, emphasizes the potential role that viral disease may play in the population dynamics of wild fish stocks, and the threat that these viruses may pose to aquaculture.


Subject(s)
Arenavirus/isolation & purification , Fish Diseases/virology , Nidovirales/isolation & purification , Reoviridae/isolation & purification , Salmon/virology , Virus Diseases/veterinary , Animals , Arenavirus/classification , Arenavirus/genetics , Blood Cells/virology , In Situ Hybridization , Metagenomics , Nidovirales/classification , Nidovirales/genetics , Pacific Ocean , Reoviridae/classification , Reoviridae/genetics , Sequence Analysis, DNA , Transcription, Genetic , Virus Diseases/virology
8.
Infect Genet Evol ; 74: 103924, 2019 10.
Article in English | MEDLINE | ID: mdl-31216491

ABSTRACT

A bacilliform virus was isolated from yellow catfish in China. This virus can directly adapt in cultures of EPC cells. The virus particles, which were rod-shaped approximately 120 nm long and 20 nm wide, were visible in the cytoplasm of EPC cells. The full-length genome of this virus is 26,985 nt. The genome contains four open reading frames that encode polyprotein1ab, spike glycoprotein, M protein, and N protein. There was a putative slippery sequence 14861UUUAAAC14867, which could be modeled into an RNA pseudoknot structure. The predicted amino acid sequence of pp1ab, S, M, and N genes shares 8.7%-40.2% homology with those of the two known Bafinivirus strains-WBV and FHMNV. Based on the viral morphology, genome organization, and sequence homology, this newly identified bacilliform virus appears to be Piscanivirus. To the best of our knowledge, this is the first report of Piscanivirus in yellow catfish and Piscanivirus in China.


Subject(s)
Catfishes/virology , Genome, Viral , Nidovirales/classification , Whole Genome Sequencing/methods , Animals , Cell Line , Genome Size , Nidovirales/genetics , Nidovirales/isolation & purification , Open Reading Frames , Phylogeny , Sequence Homology, Amino Acid
9.
Arch Virol ; 164(6): 1651-1654, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30900071

ABSTRACT

A nidovirus was isolated from crucian carp (Carassius auratus). The complete genome of the crucian carp nidovirus (CCNV) is 25,971 nt long and has five open reading frames, encoding the polyprotein 1ab (pp1ab), spike glycoprotein (S), membrane protein (M), and nucleocapsid protein (N). CCNV has the highest similarity to Chinook salmon nidovirus (CSNV). However, the CCNV HB93 pp1ab protein sequence has three long fragment deletions compared with the CSNV. Phylogenetic analysis based on the complete genome sequence showed that CCNV HB93 clusters with CSNV, indicating that CCNV represents a second species in the new genus Oncotshavirus within the new family Tobaniviridae in the order Nidovirales.


Subject(s)
Carps/virology , Nidovirales/classification , Sequence Analysis, RNA/methods , Animals , Genome, Viral , Nidovirales/genetics , Nidovirales/isolation & purification , Open Reading Frames , Phylogeny
10.
PLoS One ; 13(10): e0205209, 2018.
Article in English | MEDLINE | ID: mdl-30356240

ABSTRACT

In mid-February 2015, a large number of deaths were observed in the sole extant population of an endangered species of freshwater snapping turtle, Myuchelys georgesi, in a coastal river in New South Wales, Australia. Mortalities continued for approximately 7 weeks and affected mostly adult animals. More than 400 dead or dying animals were observed and population surveys conducted after the outbreak had ceased indicated that only a very small proportion of the population had survived, severely threatening the viability of the wild population. At necropsy, animals were in poor body condition, had bilateral swollen eyelids and some animals had tan foci on the skin of the ventral thighs. Histological examination revealed peri-orbital, splenic and nephric inflammation and necrosis. A virus was isolated in cell culture from a range of tissues. Nucleic acid sequencing of the virus isolate has identified the entire genome and indicates that this is a novel nidovirus that has a low level of nucleotide similarity to recognised nidoviruses. Its closest relatives are nidoviruses that have recently been described in pythons and lizards, usually in association with respiratory disease. In contrast, in the affected turtles, the most significant pathological changes were in the kidneys. Real time PCR assays developed to detect this virus demonstrated very high virus loads in affected tissues. In situ hybridisation studies confirmed the presence of viral nucleic acid in tissues in association with pathological changes. Collectively these data suggest that this virus is the likely cause of the mortalities that now threaten the survival of this species. Bellinger River Virus is the name proposed for this new virus.


Subject(s)
Endangered Species , Nidovirales/genetics , Nidovirales/isolation & purification , Turtles/virology , Animals , Australia , Lizards , Nidovirales/pathogenicity , Phylogeny , RNA, Viral , Rivers
11.
J Aquat Anim Health ; 30(4): 253-263, 2018 12.
Article in English | MEDLINE | ID: mdl-30315600

ABSTRACT

Indigenous small cyprinid fish species play an important role in Great Lakes ecosystems and also comprise the backbone of a multimillion-dollar baitfish industry. Due to their widespread use in sport fisheries of the Laurentian Great Lakes, there are increasing concerns that baitfish may introduce or disseminate fish pathogens. In this study, we evaluated whether baitfish purchased from 78 randomly selected retail bait dealers in Michigan harbored fish viruses. Between September 2015 and June 2016, 5,400 baitfish divided into 90 lots of 60 fish were purchased. Fish were tested for the presence of viral hemorrhagic septicemia virus (VHSV), spring viremia of carp virus (SVCV), golden shiner reovirus (GSRV), fathead minnow nidovirus (FHMNV), fathead minnow picornavirus (FHMPV), and white sucker bunyavirus (WSBV). Using the epithelioma papulosum cyprini cell line and molecular confirmation, we demonstrated the presence of viruses in 18 of the 90 fish lots (20.0%) analyzed. The most prevalent virus was FHMNV, being detected in 6 of 30 lots of Fathead Minnow Pimephales promelas and 3 of 42 lots of Emerald Shiners Notropis atherinoides. We also confirmed GSRV in two fish species: the Golden Shiner Notemigonus crysoleucas (5 of 11 lots) and Fathead Minnow (3 of 30 lots). Two VHSV (genotype IVb) isolates were recovered from a single lot of Emerald Shiners. No SVCV, FHMPV, or WSBV was detected in any of the fish examined. Some of the infected fish exhibited clinical signs and histopathological alterations. This study demonstrates that live baitfish are a potential vector for the spread of viral pathogens and underscores the importance of fish health certifications for the Great Lakes baitfish industry.


Subject(s)
Cyprinidae/virology , Fish Diseases/virology , Animals , Cell Line , Fish Diseases/epidemiology , Michigan/epidemiology , Nidovirales/isolation & purification , Nidovirales Infections/veterinary , Novirhabdovirus/isolation & purification , Reoviridae/isolation & purification , Reoviridae Infections/veterinary , Rhabdoviridae Infections/veterinary
12.
Virology ; 524: 160-171, 2018 11.
Article in English | MEDLINE | ID: mdl-30199753

ABSTRACT

Transcriptomics has the potential to discover new RNA virus genomes by sequencing total intracellular RNA pools. In this study, we have searched publicly available transcriptomes for sequences similar to viruses of the Nidovirales order. We report two potential nidovirus genomes, a highly divergent 35.9 kb likely complete genome from the California sea hare Aplysia californica, which we assign to a nidovirus named Aplysia abyssovirus 1 (AAbV), and a coronavirus-like 22.3 kb partial genome from the ornamented pygmy frog Microhyla fissipes, which we assign to a nidovirus named Microhyla alphaletovirus 1 (MLeV). AAbV was shown to encode a functional main proteinase, and a translational readthrough signal. Phylogenetic analysis suggested that AAbV represents a new family, proposed here as Abyssoviridae. MLeV represents a sister group to the other known coronaviruses. The importance of MLeV and AAbV for understanding nidovirus evolution, and the origin of terrestrial nidoviruses are discussed.


Subject(s)
Coronaviridae/classification , Genome, Viral/genetics , Nidovirales Infections/virology , Nidovirales/classification , Transcriptome , California , Computational Biology , Coronaviridae/genetics , Coronaviridae/isolation & purification , Evolution, Molecular , Nidovirales/genetics , Nidovirales/isolation & purification , Peptide Chain Termination, Translational/genetics , Peptide Hydrolases/genetics , Phylogeny , Viral Proteins/genetics , Virion
13.
Virus Res ; 242: 49-57, 2017 10 15.
Article in English | MEDLINE | ID: mdl-28855097

ABSTRACT

Eleven viral isolates derived mostly in albopictus C6/36 cells from mosquito pools collected in Southeast Asia and the Americas between 1966 and 2014 contained particles with electron microscopy morphology typical of reoviruses. Metagenomics analysis yielded the near complete genomes of three novel reoviruses, Big Cypress orbivirus, Ninarumi virus, and High Island virus and a new tetravirus, Sarawak virus. Strains of previously characterized Sathuvarachi, Yunnan, Banna and Parry's Lagoon viruses (Reoviridae), Bontang virus (Mesoniviridae), and Culex theileri flavivirus (Flaviviridae) were also characterized. The availability of these mosquito virus genomes will facilitate their detection by metagenomics or PCR to better determine their geographic range, extent of host tropism, and possible association with arthropod or vertebrate disease.


Subject(s)
Culicidae/virology , Flaviviridae/genetics , Flaviviridae/isolation & purification , Nidovirales/genetics , Nidovirales/isolation & purification , Reoviridae/genetics , Reoviridae/isolation & purification , Animals , Asia, Southeastern , Flaviviridae/classification , Genome, Viral , Nidovirales/classification , Reoviridae/classification , Sequence Analysis, DNA
14.
Virus Res ; 240: 130-139, 2017 08 15.
Article in English | MEDLINE | ID: mdl-28823942

ABSTRACT

A new insect nidovirus (named Yichang virus) from the family Mesoniviridae was isolated, identified, and characterized from Culex mosquitoes in Hubei, China. Results showed a high number of viral RNA copies (up to 1011 copies/ml) within 48h in C6/36 cells. In addition, the titers of the Yichang virus reached maximal levels of 107 PFU/mL at 6 d post-infection (dpi). The virus produced moderate cytopathic effects when the multiplicity of infection ranged from 0.001-0.1 at 6 dpi, but did not replicate in mammalian cells. Under electron microscopy, the virion of the Yichang virus appeared as spherical particles with diameters of ∼80nm and large club-shaped projections. Although subsequent genomic sequence analysis revealed that the Yichang virus had similar protein patterns as those of other mesoniviruses, the nucleotide acids shared less than 20% BLAST query coverage with known viruses in the family Mesoniviridae, and showed a maximum sequence identity of 67% for RNA-dependent RNA polymerase (RdRp). The putative protein sequences showed slightly higher identity (28%-68%), and the most conserved domain was RdRp. Based on the phylogenetic and pairwise evolutionary distance analyses, the Yichang virus should be considered a new species belonging to a currently unassigned genus within the family Mesoniviridae.


Subject(s)
Culex/virology , Nidovirales/genetics , Nidovirales/isolation & purification , Animals , China , Evolution, Molecular , Nidovirales/classification , Nidovirales/enzymology , Phylogeny , RNA, Viral/genetics , RNA, Viral/metabolism , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism , Viral Proteins/genetics , Viral Proteins/metabolism
15.
Sci Rep ; 7(1): 271, 2017 03 21.
Article in English | MEDLINE | ID: mdl-28325899

ABSTRACT

The Nam Dinh virus (NDiV) was isolated from Culex quinquefasciatus in Shenzhen, China, for the first time, in 2011. In this study, we characterized the ultrastructure of NDiV, determined its complete genome sequence and made comparisons with other known nidoviruses. Electron microscopic observation revealed that the NDiV strain isolated in China produced viral nucleocapsid-like particles and vesicles in host cells. The extracellular virions were enveloped and were spherical with short spikes. The complete genome sequence of the newly isolated NDiV was submitted to the GenBank database (GenBank accession number KF522691). Sequencing of the viral genome showed that the homologies of NDiV isolated in China and Vietnam were greater than 94.0% and 89.0% at the nucleotide and amino acid sequence levels, respectively. Moreover, gene substitution was detected, whereas insertions and deletions were not. A phylogenetic tree analysis showed that these viruses belong to the genus Alphamesonivirus1 of the family Mesoniviridae. The similarity between the two viruses regarding morphological and molecular biological characteristics indicates that the molecular genetics of NDiV are conservative and that the regional differences are unlikely to have a significant effect. This is the first report of the isolation and complete sequencing of a mesonivirus in mainland China.


Subject(s)
Culex/virology , Genome, Viral , Nidovirales/genetics , Nidovirales/ultrastructure , Virion/ultrastructure , Animals , China , Cluster Analysis , Microscopy, Electron , Nidovirales/isolation & purification , Phylogeny , Sequence Analysis, DNA , Sequence Homology , Whole Genome Sequencing
16.
Article in English, German | MEDLINE | ID: mdl-27735965

ABSTRACT

OBJECTIVES: Nidoviruses have recently been described as a putative cause of severe respiratory disease in pythons in the USA and Europe. The objective of this study was to establish the use of a conventional PCR for the detection of nidoviruses in samples from live animals and to extend the list of susceptible species. MATERIALS AND METHODS: A PCR targeting a portion of ORF1a of python nidoviruses was used to detect nidoviruses in diagnostic samples from live boas and pythons. A total of 95 pythons, 84 boas and 22 snakes of unknown species were included in the study. Samples tested included oral swabs and whole blood. RESULTS: Nidoviruses were detected in 27.4% of the pythons and 2.4% of the boas tested. They were most commonly detected in ball pythons (Python [P.] regius) and Indian rock pythons (P. molurus), but were also detected for the first time in other python species, including Morelia spp. and Boa constrictor. Oral swabs were most commonly tested positive. CONCLUSION: The PCR described here can be used for the detection of nidoviruses in oral swabs from live snakes. These viruses appear to be relatively common among snakes in captivity in Europe and screening for these viruses should be considered in the clinical work-up. CLINICAL RELEVANCE: Nidoviruses are believed to be an important cause of respiratory disease in pythons, but can also infect boas. Detection of these viruses in live animals is now possible and can be of interest both in diseased animals as well as in quarantine situations.


Subject(s)
Boidae/virology , Nidovirales Infections/veterinary , Nidovirales/isolation & purification , Respiratory Tract Infections/veterinary , Animals , Mouth/virology , Nidovirales/genetics , Nidovirales Infections/diagnosis , Nidovirales Infections/virology , Phylogeny , Polymerase Chain Reaction/veterinary , RNA, Viral/isolation & purification , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/virology
17.
J Aquat Anim Health ; 28(2): 131-41, 2016 06.
Article in English | MEDLINE | ID: mdl-27230033

ABSTRACT

In 2011, the Fathead Minnow nidovirus (FHMNV; Genus Bafinivirus, Family Coronaviridae, Order Nidovirales) was isolated from pond-raised juvenile Muskellunge Esox masquinongy suffering from lingering mortality at the Wild Rose Hatchery in Wild Rose, Wisconsin. Moribund Muskellunge exhibited tubular necrosis in the kidneys as well as multifocal coalescing necrotizing hepatitis. The FHMNV was also isolated from apparently healthy juvenile Muskellunge at the Wolf Lake State Fish Hatchery in Mattawan, Michigan. The identity of the two syncytia-forming viruses (designated MUS-WR and MUS-WL from Wild Rose Hatchery and Wolf Lake State Fish Hatchery, respectively) as strains of FHMNV was determined based on multiple-gene sequencing and phylogenetic analyses. The pathogenicity of the MUS-WL FHMNV strain was determined by experimentally infecting naive juvenile Muskellunge through intraperitoneal injection with two viral concentrations (63 and 6.3 × 10(3) TCID50/fish). Both doses resulted in 100% mortality in experimentally infected fish, which exhibited severely pale gills and petechial hemorrhaging in eyes, fins, and skin. Histopathological alterations in experimentally infected fish were observed mainly in the hematopoietic tissues in the form of focal areas of necrosis. Phylogenetic analysis of concatenated partial spike glycoprotein and helicase gene sequences revealed differences between the MUS-WL FHMNV, MUS-WR FHMNV, and two other FHMNV originally isolated from moribund Fathead Minnows Pimephales promelas including the index FHMNV strain (GU002364). Based on a partial helicase gene sequence, a reverse transcriptase PCR assay was developed that is specific to FHMNV. These results give evidence that the risks posed to Muskellunge by FHMNV should be taken seriously. Received May 1, 2015; accepted February 8, 2016.


Subject(s)
Aquaculture , Esocidae , Fish Diseases/virology , Nidovirales Infections/veterinary , Nidovirales/isolation & purification , Animals , Fish Diseases/mortality , Nidovirales/classification , Nidovirales/genetics , Nidovirales Infections/virology , Phylogeny
18.
Virology ; 491: 20-6, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26874014

ABSTRACT

The objective of this study was to investigate a role of a recently discovered marsupial nidovirus in the development of a neurological disease, termed wobbly possum disease (WPD), in the Australian brushtail possum (Trichosurus vulpecula). Four possums received 1 mL of a standard inoculum that had been prepared from tissues of WPD-affected possums, 4 possums received 1.8 mL (1 × 10(6) TCID50) of a cell lysate from inoculated cultures, and 4 possums received 1 mL (× 10(7) TCID50) of a purified WPD isolate. All but one possum that received infectious inocula developed neurological disease and histopathological lesions characteristic for WPD. High levels of viral RNA were detected in livers from all possums that received infectious inocula, but not from control possums. Altogether, our data provide strong experimental evidence for the causative involvement of WPD virus in development of a neurological disease in infected animals.


Subject(s)
Nidovirales Infections/veterinary , Nidovirales/physiology , Trichosurus/virology , Animals , Australia , Female , Liver/pathology , Liver/virology , Male , Nidovirales/classification , Nidovirales/genetics , Nidovirales/isolation & purification , Nidovirales Infections/pathology , Nidovirales Infections/virology
19.
Bing Du Xue Bao ; 32(6): 782-9, 2016 11.
Article in Chinese | MEDLINE | ID: mdl-30004652

ABSTRACT

Three strains of an insect nidovirus, the Nam Dinh virus (NDiV), isolated in Yunnan Province, China, have been identified. Aedes albopictus C6/36 cells were used to isolate NDiV from mosquitoes collected in Yunnan Province in 2012.Culture supernatants with a positive cytopathic effect were harvested for virus identification by sequence-independent single primer amplification. Transmission electron microscopy revealed virion structure to be spherical with a diameter of 60~80nm.Reverse transcription-polymerase chain reaction was applied to amplify sequences of RNA-dependent RNA-polymerase (RdRp), HEL1(superfamily 1helicase)and spike protein. The amino-acid sequences of three isolates from Yunnan Province showed>98% homology with NDiV strains. Phylogenetic analyses showed that these three isolates, along with NDiV, could be classified into the family Mesoniviridae.


Subject(s)
Culicidae/virology , Mosquito Vectors/virology , Nidovirales Infections/virology , Nidovirales/isolation & purification , Animals , China , Culicidae/classification , Humans , Laos , Mosquito Vectors/classification , Nidovirales/classification , Nidovirales/genetics , Nidovirales/ultrastructure , Nidovirales Infections/transmission , Phylogeny
20.
J Virol Methods ; 222: 66-71, 2015 Sep 15.
Article in English | MEDLINE | ID: mdl-26028426

ABSTRACT

The objective of the study was to establish a system for isolation of a recently described, thus far uncultured, marsupial nidovirus associated with a neurological disease of possums, termed wobbly possum disease (WPD). Primary cultures of possum macrophages were established from livers of adult Australian brushtail possums (Trichosurus vulpecula). High viral copy numbers (up to 6.9×10(8)/mL of cell lysate) were detected in infected cell culture lysates from up to the 5th passage of the virus, indicating that the putative WPD virus (WPDV) was replicating in cultured cells. A purified virus stock with a density of 1.09 g/mL was prepared using iodixanol density gradient ultracentrifugation. Virus-like particles approximately 60 nm in diameter were observed using electron microscopy in negatively stained preparations of the purified virus. The one-step growth curve of WPDV in macrophage cultures showed the highest increase in intracellular viral RNA between 6 and 12h post-infection. Maximum levels of cell-associated viral RNA were detected at 24h post-infection, followed by a decline. Levels of extracellular RNA increased starting at 9h post-infection, with maximum levels detected at 48 h post-infection. The establishment of the in vitro system to culture WPDV will facilitate further characterisation of this novel nidovirus.


Subject(s)
Macrophages/virology , Nidovirales Infections/veterinary , Nidovirales/growth & development , Nidovirales/isolation & purification , Trichosurus/virology , Virus Cultivation/methods , Animals , Cells, Cultured , Centrifugation, Density Gradient , Microscopy, Electron, Transmission , Nidovirales/ultrastructure , Nidovirales Infections/virology , Virion/ultrastructure
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